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Larmor

  • Install
  • Gallery
  • User guide
  • Viewer
  • Background
  • Reference
  • Agents
  • About
  • Install
  • Gallery
  • User guide
  • Viewer
  • Background
  • Reference
  • Agents
  • About

Section Navigation

  • Preprocessing
    • Denoising a DWI with MP-PCA
    • Denoising, then removing Gibbs ringing
  • Models
    • Fitting DKI to a real brain
    • Fitting DKI to a synthetic signal
    • DTI of a simulated brain
    • Fitting DTI to a synthetic tensor
  • Spherical deconvolution and peaks
    • Fitting FODs to a synthetic signal
    • FODs, peaks and asymmetric FODs of a simulated brain
    • Finding the peaks of FODs
  • Tractography
    • Structural connectomes
    • Bringing an atlas region into diffusion space
    • Track density images
    • Whole-brain tractography of a simulated brain
    • Tracking streamlines through crossing bundles
    • Tract profiles: FA along a bundle
    • Writing a tractogram batch by batch
  • Files
    • Reading and writing files
    • Reading MRIToolkit results from MATLAB files
  • Viewer
    • Moving around the 2D views
    • The 3D view
    • 4D images in the viewer
    • DTI colours in the viewer
    • FOD glyphs in the viewer
    • A parcellation in the viewer
    • Peaks in the viewer
    • A brain in the viewer
    • Separate views and rotation videos
    • Saving and reopening a viewer session
    • Surfaces in the viewer
    • Tractograms in the viewer
    • Streamlines as tubes
    • Volumes and overlays in the viewer
  • Gallery
  • Files

Files#

Reading and writing images, gradient tables and tractograms, and converting between file formats.

Reading and writing files

Reading and writing files

Reading MRIToolkit results from MATLAB files

Reading MRIToolkit results from MATLAB files